cemba-portal-help.md

+# Status updates on the Prototype of the CEMBA web portal
+
+***from March 13, 2019 CEMBA Biweekly Meeting***
+
+## :goal: Goals
+
+* [ ] Use tabular data to identify the available projections of TRIO tracing.
+* [ ] Use CCFv3, Marga drawings, and ARA to identify and visualize the contrast of regions of interests.
+* [ ] Provide entry points to molecule data (Eran’s group portal) and anatomy data (Hongwei’s group portal).
+
+---
+
+## :gear:  UI Components
+
+* [ ] 🧠 Projections table of the TRIO tracing (EnvA Rabies, AAV2retro)
+* [ ] 🧠 ARA images
+    * Levels (39, 46, 51)
+* [ ] 🧠 CCF images and Marga drawings
+    * Slices (3, 4, 5)
+    * Drawings (3A~3F, 4A~4H, 5A~5J)
+
+**💉TRIO tracers**
+```
+* Env Rabies
+  * EnvA G-deleted rabies RVdG-4mCherry
+  * AAV8-hSyn-FLEX-TVA-P2A-GFP-2A-oG
+* AAV (AAV2retro)
+   * AAVretro-EF1a-Cre
+```
+![trio_tracing_table](/uploads/15bf16de89546bc7460d21491c92d95e/Screen_Shot_2019-03-27_at_12.48.34_PM.png)*TRIO tracing table of projected regions.*
+<hr><br><br><br>
+
+
+![section3_ARA_MOP](uploads/49ecc1c7819af6a4ffb79433da4da9aa/section3_ARA_MOP.png)
+
+![section3_CCF_MOP](uploads/0d34d74badda310cb37552aa2e9d2cba/section3_CCF_MOP.png)
+
+*ARA Level 39 / CEMBA CCF Slice 3 and Marga drawings (3A~3F)*
+<hr><br><br><br>
+
+
+![section4_ARA_MOP](uploads/44fffebb12ee84c2537f00c1d85bd014/section4_ARA_MOP.png)
+
+![section4_CCF_MOP](uploads/9f8f88db446dc57808f049c26c880e60/section4_CCF_MOP.png)
+
+*ARA Level 46 / CEMBA CCF Slice 4 and Marga drawings (4A~4H)*
+<hr><br><br><br>
+
+
+![section5_ARA_MOP](uploads/b63b4c9c9aaeb1826830ecee149cf176/section5_ARA_MOP.png)
+
+![section5_CCF_MOP](uploads/30de22000887476d55b9a1d4227ae336/section5_CCF_MOP.png)
+
+*ARA Level 51 / CEMBA CCF Slice 5 and Marga drawings (5A~5J)*
+<br><br>
+
+
+
+
+---
+
+## :link:   Link
+
+![Screen_Shot_2019-03-27_at_2.12.30_PM](/uploads/b997bb594cd672b6845ba01403835c04/Screen_Shot_2019-03-27_at_2.12.30_PM.png)*X (marked as projection is present), will give an user an option to jump*
+
+<br><br><br>
+
+![Screen_Shot_2019-03-27_at_2.12.38_PM](/uploads/8fc3ebe8a027ad02e7f5ae2daf44b4e7/Screen_Shot_2019-03-27_at_2.12.38_PM.png)*Data Repository of our published cases (Dashboard page)*
+
+<br><br><br>
+
+![Screen_Shot_2019-03-27_at_2.13.27_PM](/uploads/646fad40c86028c18776136250103886/Screen_Shot_2019-03-27_at_2.13.27_PM.png)*Gene methylation portal (Brainome portal)*
+
+<br><br><br>
+
+
+
+
+---
+
+## :robot:  Run
+
+![cemba_walkthrough_sample_750_460](/uploads/b6f7098b8543bbe1641b08fd6780d56b/cemba_walkthrough_sample_750_460.gif)
+
+![Prototype](http://mcpweb-dev.loni.usc.edu/Dinoskin/page/cemba)
+
+---