Status updates on the Prototype of the CEMBA web portal
from March 13, 2019 CEMBA Biweekly Meeting
🥅 Goals
- Use tabular data to identify the available projections of TRIO tracing.
- Use CCFv3, Marga drawings, and ARA to identify and visualize the contrast of regions of interests.
- Provide entry points to molecule data (Eran’s group portal) and anatomy data (Hongwei’s group portal).
⚙ UI Components
- 🧠 Projections table of the TRIO tracing (EnvA Rabies, AAV2retro)
-
🧠 ARA images
- Levels (39, 46, 51)
-
🧠 CCF images and Marga drawings
- Slices (3, 4, 5)
- Drawings (3A~3F, 4A~4H, 5A~5J)
* Env Rabies
* EnvA G-deleted rabies RVdG-4mCherry
* AAV8-hSyn-FLEX-TVA-P2A-GFP-2A-oG
* AAV (AAV2retro)
* AAVretro-EF1a-Cre
TRIO tracing table of projected regions.
ARA Level 39 / CEMBA CCF Slice 3 and Marga drawings (3A~3F)
ARA Level 46 / CEMBA CCF Slice 4 and Marga drawings (4A~4H)
ARA Level 51 / CEMBA CCF Slice 5 and Marga drawings (5A~5J)
🔗 Link
X (marked as projection is present), will give an user an option to jump
Data Repository of our published cases (Dashboard page)
Gene methylation portal (Brainome portal)