Skip to content

GitLab

  • Projects
  • Groups
  • Snippets
  • Help
    • Loading...
  • Help
    • Help
    • Support
    • Community forum
    • Submit feedback
    • Contribute to GitLab
  • Sign in
C cichelp
  • Project overview
    • Project overview
    • Details
    • Activity
  • Analytics
    • Analytics
    • Repository
    • Value Stream
  • Wiki
    • Wiki
  • Members
    • Members
  • Activity
Collapse sidebar
  • Seita Yamashita
  • cichelp
  • Wiki
  • cemba portal help

Last edited by Seita Yamashita Jul 29, 2019
Page history
This is an old version of this page. You can view the most recent version or browse the history.

cemba portal help

Status updates on the Prototype of the CEMBA web portal

from March 13, 2019 CEMBA Biweekly Meeting

🥅 Goals

  • Use tabular data to identify the available projections of TRIO tracing.
  • Use CCFv3, Marga drawings, and ARA to identify and visualize the contrast of regions of interests.
  • Provide entry points to molecule data (Eran’s group portal) and anatomy data (Hongwei’s group portal).

⚙ UI Components

  • 🧠 Projections table of the TRIO tracing (EnvA Rabies, AAV2retro)
  • 🧠 ARA images
    • Levels (39, 46, 51)
  • 🧠 CCF images and Marga drawings
    • Slices (3, 4, 5)
    • Drawings (3A~3F, 4A~4H, 5A~5J)

💉TRIO tracers

* Env Rabies
  * EnvA G-deleted rabies RVdG-4mCherry
  * AAV8-hSyn-FLEX-TVA-P2A-GFP-2A-oG
* AAV (AAV2retro)
   * AAVretro-EF1a-Cre

trio_tracing_tableTRIO tracing table of projected regions.





section3_ARA_MOP

section3_CCF_MOP

ARA Level 39 / CEMBA CCF Slice 3 and Marga drawings (3A~3F)





section4_ARA_MOP

section4_CCF_MOP

ARA Level 46 / CEMBA CCF Slice 4 and Marga drawings (4A~4H)





section5_ARA_MOP

section5_CCF_MOP

ARA Level 51 / CEMBA CCF Slice 5 and Marga drawings (5A~5J)


🔗 Link

Screen_Shot_2019-03-27_at_2.12.30_PMX (marked as projection is present), will give an user an option to jump




Screen_Shot_2019-03-27_at_2.12.38_PMData Repository of our published cases (Dashboard page)




Screen_Shot_2019-03-27_at_2.13.27_PMGene methylation portal (Brainome portal)





🤖 Run

cemba_walkthrough_sample_750_460

Prototype


Clone repository
  • cemba portal help
  • cemba prototype
  • dashboard help
  • Home