CEMBA web portal help

from March 13, 2019 CEMBA Biweekly Meeting

🥅 Use Cases

• Use tabular data to identify the available projections of TRIO tracing.
• Use CCFv3, Marga drawings, and ARA to identify and visualize the contrast of regions of interests.
• Provide entry points to molecule data (Eran’s group portal) and anatomy data (Hongwei’s group portal).
• Sagittal Brain Navigator to see the scope of slices on a sagittal plane.

⚙ UI Components

• 🧠 Projections table of the TRIO tracing (EnvA Rabies, AAV2retro)
• 🧠 ARA images
  • Levels (39, 46, 51)
• 🧠 CCF images and Marga drawings
  • Slices (3, 4, 5)
  • Drawings (3A~3F, 4A~4H, 5A~5J)
  • ARA Levels (33~39, 39~45, 45~51)
• 🧠 Sagittal Brain Navigator

💉TRIO tracers

* Env Rabies
  * EnvA G-deleted rabies RVdG-4mCherry
  * AAV8-hSyn-FLEX-TVA-P2A-GFP-2A-oG
* AAV (AAV2retro)
   * AAVretro-EF1a-Cre

TRIO tracing table of projected regions.

ARA	CCF

ARA Level 39 / CEMBA CCF Slice 3 and Marga drawings (3A~3F)

ARA	CCF

ARA Level 46 / CEMBA CCF Slice 4 and Marga drawings (4A~4H)

ARA	CCF

ARA Level 51 / CEMBA CCF Slice 5 and Marga drawings (5A~5J)

🔗 Link

X (marked as projection is present), will give an user an option to jump

Data Repository of our published cases (Dashboard page)

Gene methylation portal (Brainome portal)

🤖 Run