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Add software guide
Ian Bowman authored
bb2f2fd2
Name Last commit Last update
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__init__.py More tests better testing data convert to square matrix code.
char_clust.py Bug fixes
char_cmt_str.py Better schematics.
cmp_ctx_mats.py Now sorted rois in the communities
convert_io_tbl_to_row_col_ctx_mat.py modified for tests
hpf_kmeans.py New multiscale k-means code.
hpf_ms.py stupid mistake after other stupid mistakes
hpf_plot.py Can now plot expression profiles
hpf_utils.py Fixed code so that tests pass
match_cmt_str.py Now sorted rois in the communities
ms_char_clust.sh New multiscale k-means code.
ms_char_cmt_str.sh Now have qsub char cmt str scripts as well
ms_run_k-means_row_col_mat.sh New multiscale k-means code.
ms_run_louvain_row_col_ctx_mat.sh more intelligent pickle, better comments
pickle_juice.py new data and updated name of reproducibility helper.
plot_mat.py Simpler naming
qsub_char_clust.sh New multiscale k-means code.
qsub_char_cmt_str.sh Optimizations after profiler investigations. Updated tests.
qsub_run_k-means_row_col_mat.sh New multiscale k-means code.
qsub_run_louvain_row_col_ctx_mat.sh Now have qsub char cmt str scripts as well
run_k-means_row_col_mat.py New multiscale k-means code.
run_louvain_row_col_ctx_mat.py Now sorted rois in the communities
software_guide.md Add software guide
verify_ms_louvain_char_cmt_str.sh new verification