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Conor Owens-Walton
1. ENIGMA-DTI Preprocessing
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8b6d228b
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8b6d228b
authored
4 years ago
by
Elizabeth Haddad
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@@ -93,9 +93,9 @@ _example of opposite phase encoding images that have been corrected:_
-
*eddy_correct, fdt_rotate_bvecs*
#### Only one phase-encoding direction
-
eddy/(eddy_correct +fdt_rotate_bvecs),
*ENIGMA-DTI EPI Correction*
-
generate a synthetic opposite phase encoding b0 using
[
*Synb0-DISCO*
](
https://github.com/MASILab/Synb0-DISCO
)
,
*topup,
applytopup,
eddy*
-
generate a synthetic opposite phase encoding b0 using
[
*Synb0-DISCO*
](
https://github.com/MASILab/Synb0-DISCO
)
,
*topup, eddy*
#### Two opposite phase encoding directions
-
*topup,
applytopup,
eddy*
-
*topup, eddy*
#### HARDI or multi-shell data
-
*eddy*
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